Welcome to the 3rd cohort of OLS program!

Niklas Morberg (CC BY-NC 2.0)

The OLS-3 program

Purpose: Training for early stage researchers and young leaders interested in furthering their Open Science skills

Outcome: Ambassadors for Open Science practice, training and education across multiple European and international bioinformatics communities.

Process: A 16-week mentoring & training program, based on the Mozilla Open Leader program, helping participants in becoming Open Science ambassadors by using three principles:

  1. Sharing essential knowledge required to create, lead, and sustain an Open Science project.
  2. Connecting members across different communities, backgrounds, and identities by creating space in this program for them to share their experiences and expertise.
  3. Empowering them to become effective Open Science ambassadors in their communities.

Goals and Learning Objectives

The vision of Open Life Science program is to strengthen Open Science skills for early stage researchers and young leaders in life science.

At the end of the program, our participants will be able to:

  • Describe and define the terms openness, open science, open leadership, community interactions, value exchanges, inclusivity, accessibility, open Science practices in developing resources and training
  • Learn how to apply those principles to open leadership and working open in their projects and communities . Learn how to collect, invite, and tell stories that demonstrate how and why openness benefits the communities they serve
  • Give original examples for the types of openness in science
  • Design
    • Illustrate the need for a project, its vision, and its goals
    • Embrace and communicate the benefits of Open Science and how to strategically apply different open practices to their work
    • Identify the public resources to share their data
    • Identify the different type of Open Access and associated journals
  • Build
    • Start any project with openness in mind from day one
    • Setup a project repository on GitHub using best practices for enabling collaboration
    • Choose and apply open licenses appropriately
  • Empower
    • Create and enforce a safe working environment
    • Promote the values of Open Science to empower others to lead and collaborate
    • Include a broad range of contributors in their work
    • Communicate their work and vision in a 2min demo of elevator pitch
  • Lead an open project in science

Timeline

OLS’s third cohort (OLS-3) will be conducted from February to May 2021.

  • December 1, 2021 : Opening of the applications on Easychair

    We have templates you can download to use when preparing your application.

  • January 4, 2021 : Application webinar( Talk + Q&A) - Notes with Zoom call link - Recording

  • January 7, 2021 : Application Clinic Call( Q&A) - Notes with Zoom call link

    At this call, OLS team will be available to provide help if you have any question related to your application

  • January 11, 2021 : Closing of the applications on Easychair

  • January 13, 2021 : For the EOSC-Life collaborating organisation, Open office hour ( Q&A) - Notes with Zoom call link

  • January 18, 2021 : For the EOSC-Life collaborating organisation, Closing of the applications on Easychair

  • January 26, 2021 : Successful applicants announced

  • February 08, 2021: Start of the program

  • May 24, 2021: End of the program

Schedule

During the program,

  • Mentors and mentees meet every 2 weeks for a 30 minutes call
  • Mentees participate every ~2 weeks to 90-minutes cohort calls during which the program leaders introduce new topics and resources, facilitate break-out discussions, and invite expert from the field to give talks
  • Mentees can participate to skill-up, Q&A or coworking session in the weeks without cohort calls
  • Mentors take part to mentoring workshop and calls

Organizers will inform participants of the week schedule by email.

Subscribe to the OLS calendar

Week Call Date Topic Agenda
Week 01 (start. February 08, 2021) Mentor-Mentee   Meet your mentor! Meet each other and discuss your personal motivation, expectations, working practices and project goals
  Mentor February 8, 2021 (17:30 Universal Time) Mentor training  
  Mentor February 9, 2021 (14:00 Universal Time) Mentor training  
Week 02 (start. February 15, 2021) Cohort February 17, 2021 (12:30 Universal Time) Welcome to Open Life Science! Meet other members of your cohort, Share project vision, Intro to working openly (open canvas)
Week 03 (start. February 22, 2021) Mentor February 22, 2021 (09:00 Universal Time) Mentoring workshop  
  Mentor February 23, 2021 (17:00 Universal Time) Mentoring workshop  
  Mentor-Mentee   Meet your mentor! Discuss assignments from the cohort call & concrete implementations
  Coworking February 24, 2021 (17:00 Universal Time) Open office hour, coworking on assignments, knowledge exchange and networking  
Week 04 (start. March 01, 2021) Cohort March 03, 2021 (17:00 Universal Time) Tooling and roadmapping for Open projects Working with GitHub as a community hub: Markdown as a tool to make websites, Licence, Goals and Roadmap, Contributors, Code of Conduct
Week 05 (start. March 08, 2021) Mentor-Mentee   Meet your mentor!  
  Cohort March 10, 2021 (12:30 Universal Time) Skill-up: GitHub tutorial for beginners  
  Skill-up March 10, 2021 (12:30 Universal Time) GitHub tutorial for beginners  
Week 06 (start. March 15, 2021) Cohort March 17, 2021 (12:30 Universal Time) Open Science I: Project Development Developing Open Projects: Iterative and agile project management, Open- Source, Software, Hardware, Data
Week 07 (start. March 22, 2021) Mentor-Mentee   Meet your mentor!  
  Mentor   Mentor training  
  Coworking March 24, 2021 (17:00 Universal Time) Open office hour, coworking on assignments, knowledge exchange and networking  
Week 08 (start. March 31, 2021) Cohort March 31, 2021 (16:00 Universal Time) Open Science II: Knowledge Dissemination Sharing Open Project: Preprint publications, DOI and citation, Open protocols, Open Education & Training
Week 09 (start. April 05, 2021) Mentor-Mentee   Meet your mentor!  
  Skill-up April 07, 2021 (11:30 Universal Time) Personal Ecology and Ally Skills  
Week 10 (start. April 12, 2021) Cohort April 14, 2021 (11:30 Universal Time) Open Science III: Next steps - applying FAIR research principles FAIRification of existing or mature projects, etc
Week 11 (start. April 19, 2021) Mentor-Mentee   Meet your mentor!  
  Coworking April 21, 2021 (16:00 Universal Time) Open office hour, coworking on assignments, knowledge exchange and networking  
Week 12 (start. April 26, 2021) Cohort April 28, 2021 (16:00 Universal Time) Open Leadership: Academia, industry and beyond!  
Week 13 (start. May 03, 2021) Mentor-Mentee   Meet your mentor!  
  Cohort May 05, 2021 (11:30 Universal Time) Sketchnoting and visual storytelling  
  Skill-up May 05, 2021 (11:30 Universal Time) Sketchnoting and visual storytelling  
Week 14 (start. May 10, 2021) Cohort May 12, 2021 (11:30 Universal Time) Designing & Empowering for inclusivity Personas and pathways for contributors, Implicit bias & Community interactions
Week 15 (start. May 17, 2021) Mentor-Mentee   Meet your mentor! Preparation for the final demos
  Cohort May 18, 2021 (07:00 Universal Time) Final presentation rehearsal - Group 1  
  Cohort May 19, 2021 (12:00 Universal Time) Final presentation rehearsal - Group 2  
  Cohort May 20, 2021 (15:00 Universal Time) Final presentation rehearsal - Group 3  
Week 16 (start. May 24, 2021) Cohort   Final presentations & Graduation! - Group 1 5-minute demos of projects (Audience: entire community & public, Open and recorded call)
  Cohort   Final presentations & Graduation! - Group 2 5-minute demos of projects (Audience: entire community & public, Open and recorded call)
  Cohort   Final presentations & Graduation! - Group 2 5-minute demos of projects (Audience: entire community & public, Open and recorded call)
  Mentor   Mentor wrap up  

Role Descriptions

Project leads (aka Mentees)

Participants join this program with a project that they either are already working on or want to develop during this program. More details about the role of a project lead (mentee) can be found here.

For the third round of the Open Life Science program, we welcome 66 participants with 37 projects.

Mentors

Our project leads are supported in this program by our mentor-community who are paired based on the compatibility of expertise, interests and requirements of their projects. Our mentors are Open Science practitioners and champions with previous experiences in training and mentoring. They are currently working in different professions in data science, publishing, community building, software development, clinical studies, industries, scientific training and IT services.

Mentors advise and inspire

  • Connect: to people, programs, companies
  • Recommend: resources, readings, classes, experiences
  • Feedback: for the project leads to consider

Pool of mentors

We thank the 34 mentors this round.

The GitHub avatar of

Anelda van der Walt

Pronouns: she/her
@aneldavdw

Talarify and RSSE Africa

Expertise:
Community building

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Anna Krystalli

Pronouns: she/her
@annakrystalli

University Of Sheffield

Expertise:
R, Reproducible research, Research software, Version control, GIS, Data visualisation.

More about Anna

The GitHub avatar of

Beth Duckles

Pronouns: she, her
@bduckles

Insightful, Llc

Expertise:
Social science, Qualitative research, Sustainability, Standards, Mixed methods, Post academics

More about Beth

The GitHub avatar of

Bérénice Batut

Pronouns: she/her
@bebatut

University of Freiburg

Role in OLS: Director of Learning and Technology

Expertise:
Galaxy, Galaxy training, Citizen science, Bioinformatics, High-throughput sequencing, Metagenomics, Wordpress, Jekyll, GitHub/GitLab Pages, Designing and developing training material, Collaborating with Git & GitHub/GitLab, Git, GitHub, GitLab, Publishing web content

More about Bérénice

The GitHub avatar of

Bruno Soares

Pronouns: He/Him
@Bruno_E_Soares

Universidade Federal Do Rio De Janeiro

Expertise:
SciComm, Community building, Open Data, Biodiversity

More about Bruno

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Melissa Burke

Pronouns: She/Her
@burkemlou

Australian Biocommons

Expertise:
Training, FAIR training materials, Bioinformatics, Life Science, eLearning, Webinar and workshop development, Functional genomics, Parasitology

More about Melissa

The GitHub avatar of

Sam Haynes

Pronouns: He/Him
@youvegotmyname

University Of Edinburgh

Expertise:
Transcriptomics; r; bayesian statistics; high performance computing; geospatial analysis

More about Sam

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Emily Lescak

Pronouns: she, her
@elescak

Code For Science And Society

Expertise:
Community building, Communication, Diversity, Inclusion, Event planning, Leadership, Research methods, Teaching

More about Emily

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Emma Karoune

Pronouns: she/her
@ekaroune

The Alan Turing Institute And Historic England

Expertise:
Fair data, Sensitive data, Community building, Open publishing, Phytoliths, Environmental archaeology, Palaeoecology

More about Emma

The GitHub avatar of

Esther Plomp

Pronouns: she/her/hers
@PhDToothFAIRy

Delft University Of Technology - Faculty Of Applied Sciences

Expertise:
Open protocols, Open data, Research data management, FAIR, Archaeology, Bioanthropology, Isotopes, Osteology

More about Esther

The GitHub avatar of

Fotis Psomopoulos

Pronouns: he/him
@fopsom

Institute Of Applied Biosciences, Centre For Research And Technology Hellas

Expertise:
Bioinformatics, Machine learning, Training

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Harpreet Singh


Hans Raj Mahila Maha Vidyalaya Jalandhar

Expertise:
Bioinformatics, Molecular Modeling, Machine learning, R Programming

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Hans-Rudolf Hotz

@hrhotz

Friedrich Miescher Institute For Biomedical Research

Expertise:
Galaxy, Bioconductor, PostgreSQL, Bioinformatics, Next Generation Sequencing

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Iratxe Puebla

Pronouns: she/her
@IratxePuebla

Asapbio

Expertise:
Preprints, Publishing, Open access, Data publication

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Jez Cope

Pronouns: he/him
@jezcope

The British Library

Expertise:
Research data management, Digital scholarship, Libraries, Open research, Open data, Open scholarship, Open science, Research software engineering practice, Neurodiversity, Glam

More about Jez

The GitHub avatar of

Joyce Kao

Pronouns: She/Her
@joyceykao

University Hospital Rwth Aachen

Expertise:
Open innovation, Digitalization

More about Joyce

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Kate Simpson

Pronouns: She/her
@Dr_KateSimpson

Imperial College London/ The Alan Turing Institute

Expertise:
Open community development, Basic open science principles, Basic github skills, Energy, carbon and enironmental data for buildings

More about Kate

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Michael Landi

Pronouns: He/Him
@CofiaLandy

Swedish University Of Agricultural Sciences

Expertise:
Bioinformatics, Genome assembly, Epigenetics

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Laura Carter

Pronouns: she/her
@LauraC_rter

University Of Essex

Expertise:
Human rights; gender; sexuality; critical data studies

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Laura Ación

Pronouns: she/ella
@_lacion_

MetaDocencia

Expertise:
Ethics in artificial intelligence, Health data science, Responsible use of data, Latin america, Open education, Community building

More about Laura

The GitHub avatar of

Louise Bezuidenhout

Pronouns: she/her
@loubezuidenhout

University Of Oxford And University Of Cape Town

Expertise:
Open Science, Open Data, FAIR, LMIC research/ers, Social studies of data

More about Louise

The GitHub avatar of

Mallory Freeberg

Pronouns: she/her
@MalloryFreeberg

Embl European Bioinformatics Institute

Expertise:
Metadata; fair principles; post-transcriptional gene regulation; ontologies; project management; data management; bioinformatics; galaxy; github; human genomics; sensitive data sharing

More about Mallory

The GitHub avatar of

Malvika Sharan

Pronouns: she/her
@malvikasharan

The Alan Turing Institute

Role in OLS: Director of Partnerships and Strategy

Expertise:
Community building, Mentoring, Data Science best practices, Reproducibility, Inclusive and collaborative practices, Python, Version Control, Funding Proposals, Bioinformatics, Algorithm design

More about Malvika

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Meag Doherty

Pronouns: she/her
@emdohh

Expertise:
Product strategy, Go to market, User research

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Piraveen Gopalasingam

Pronouns: he/him
@cascade21

Embl-Ebi (European Bioinformatics Institute)

Expertise:
Education, Training, Course design, Course delivery, Science communication

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Prash Suravajhala

Pronouns: He/Him
@prashbio

Bioclues.Org

Expertise:
Systems genomics, bioinformatics

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Sarah Gibson

Pronouns: she/her
@drsarahlgibson

The Alan Turing Institute

Expertise:
Reproducibility, Cloud infrastructure, Open source, Community building, Continuous integration

More about Sarah

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Stephen Klusza

Pronouns: he/him/his
@codebiologist

Atlanta Metropolitan State College, Adjunct Faculty and Laboratory Professional for Biology

Expertise:
Life sciences, Genetics, Synthetic biology, Accessibility

More about Stephen

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Teresa Laguna

@teresa__laguna

Imdea Food Research Institute

Expertise:
Bionformatics, Immunology, Nutrition, Citizen Science
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Toby Hodges

Pronouns: he/him
@tbyhdgs

The Carpentries

Expertise:
Designing and developing training material, Collaborating with git & github/gitlab, Publishing web content, Wordpress, Jekyll, Github/gitlab pages, Scientific community engagement, Teaching and organising workshops

More about Toby

The GitHub avatar of

Sonika Tyagi

Pronouns: she/her
@tsonika

Monash University Melbourne

Expertise:
Genomics, Machine learning, Data Science, Computational Epigenomics, Transcriptomics

More about Sonika

The GitHub avatar of

Renato Alves

Pronouns: he/him
@renato_alvs

European Molecular Biology Laboratory (EMBL)

Expertise:
Full-stack developer, Computational Training, Reproducibility, Computational biology, Metagenomics, Meta-transcriptomics

More about Renato

The GitHub avatar of

Yo Yehudi

Pronouns: they/them
@yoyehudi

Role in OLS: Executive Director, Business and Development Lead

Expertise:
Software development, Community building, Mentoring

More about Yo

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Yvan Le Bras

Pronouns: He
@Yvan2935

French Museum Of Natural History

Expertise:
Ecology, Data management, Data analysis

More about Yvan

Mentoring training

Mentorship roles can sound like a big personal responsibility and can be overwhelming for new mentors. To support our mentors in this program, we will offer training, topic-based guided discussions and opportunity for social interaction over 4 calls during the mentorship round:

  • 2 training calls in the beginning of the cohort to get participants trained and prepared for their role as mentors
  • 1 catch-up call in the middle of the cohort to discuss new topics and challenges that might have occurred and address them
  • 1 call at the end to capture experiences of mentors and assess their interest in future cohorts
  • Social and co-working calls schedule will be agreed among the mentors as per their needs and interests

In the mentor training, our mentors will then gain mentoring skills (active listening, effective questioning, giving feedback), learn to celebrate successes and gain confidence on navigating challenges in mentoring.

A dedicated slack channel will facilitate open discussions among mentors to help them discuss their experiences, challenges and tips and tricks (contact the team if you are not yet on this channel).

Experts

Experts are invited to join cohort calls or individual mentorship calls to share their experience and expertise during the program.

We thank the 63 persons who registered to be experts in this round.

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Adam Gristwood

Pronouns: he/him
@gristwood

Freelance Science Writer And Communications Trainer

Expertise:
Life science communications

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Aidan Budd

Pronouns: he/him
@aidanbudd

Embo Solutions Gmbh

Expertise:
Community building

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Alexandra Holinski

Pronouns: She/her

EMBL-EBI

Expertise:
Scientific Education and Training, Course development, Course design, Course delivery, Methods of interactive delivery (face-to-face and virtual courses), Online training, Community building, Open Science, FAIR principles, Principles of FAIRification of (training) material, Protein Biochemistry

More about Alexandra

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Alex Chan

Pronouns: they/she
@alexwlchan

Wellcome Collection

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Aleksandra Nenadic

Pronouns: she/her/hers
@aleks_nenadic

University Of Manchester

Expertise:
Open and reproducible research best practices, Training and teaching tech to researchers, Pedagogical approaches to instructor training and curricula development

More about Aleksandra

The GitHub avatar of

Anna Krystalli

Pronouns: she/her
@annakrystalli

University Of Sheffield

Expertise:
R, Reproducible research, Research software, Version control, GIS, Data visualisation.

More about Anna

The GitHub avatar of

Arielle Bennett

Pronouns: she/her
@biotechchat

The Alan Turing Institute

Expertise:
Road mapping and strategy planning, Community consultation, Culture change, Code of conducts, Community goals, Drug discovery, Computational biology, Neuroscience.

More about Arielle

The GitHub avatar of

Beth Duckles

Pronouns: she, her
@bduckles

Insightful, Llc

Expertise:
Social science, Qualitative research, Sustainability, Standards, Mixed methods, Post academics

More about Beth

The GitHub avatar of

Beatriz Serrano-Solano

Pronouns: she/her
@BSerranoSolano

University Of Freiburg

Expertise:
Image analysis; data science; community; project management

More about Beatriz

The GitHub avatar of

Bérénice Batut

Pronouns: she/her
@bebatut

University of Freiburg

Role in OLS: Director of Learning and Technology

Expertise:
Galaxy, Galaxy training, Citizen science, Bioinformatics, High-throughput sequencing, Metagenomics, Wordpress, Jekyll, GitHub/GitLab Pages, Designing and developing training material, Collaborating with Git & GitHub/GitLab, Git, GitHub, GitLab, Publishing web content

More about Bérénice

The GitHub avatar of

Melissa Burke

Pronouns: She/Her
@burkemlou

Australian Biocommons

Expertise:
Training, FAIR training materials, Bioinformatics, Life Science, eLearning, Webinar and workshop development, Functional genomics, Parasitology

More about Melissa

The GitHub avatar of

Carlos Martinez-Ortiz

Pronouns: he/him
@neocarlitos

Netherlands eScience Center

Expertise:
Software sustainability, FAIR software, linked data

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Christine Rogers

Pronouns: she/her
@xtinerogers

Mcgill University

Expertise:
Neuroinformatics, Open science, Open source, Research software

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Danny Garside

Pronouns: he/him
@da5nsy

Nih

Expertise:
Registered reports, Peer review, Open publishing, Preprints

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Demitra Ellina

Pronouns: She/her
@j_ellina

F1000Research

Expertise:
Open science, Open research, Open access, Open peer review, Preprints

More about Demitra

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Emily Lescak

Pronouns: she, her
@elescak

Code For Science And Society

Expertise:
Community building, Communication, Diversity, Inclusion, Event planning, Leadership, Research methods, Teaching

More about Emily

The GitHub avatar of

Emma Karoune

Pronouns: she/her
@ekaroune

The Alan Turing Institute And Historic England

Expertise:
Fair data, Sensitive data, Community building, Open publishing, Phytoliths, Environmental archaeology, Palaeoecology

More about Emma

The GitHub avatar of

Emma Anne Harris

@Emma_A_Harris

Humboldt University

Expertise:
Training, Online training, E-learning, Open science, Research data management, FAIR Data, Research ethics, Research integrity, Responsible research, Innovation RRI

More about Emma Anne

The GitHub avatar of

Esther Plomp

Pronouns: she/her/hers
@PhDToothFAIRy

Delft University Of Technology - Faculty Of Applied Sciences

Expertise:
Open protocols, Open data, Research data management, FAIR, Archaeology, Bioanthropology, Isotopes, Osteology

More about Esther

The GitHub avatar of

Edward Wallace

Pronouns: he, him
@ewjwallace

University Of Edinburgh

Expertise:
Gene expression, Rna, Yeast & fungi, Bioinformatics, Open science, Data literacy, Open science in project and teaching context, Practical github, R packages, Balancing open science with the rest of your career;

More about Edward

The GitHub avatar of

Fotis Psomopoulos

Pronouns: he/him
@fopsom

Institute Of Applied Biosciences, Centre For Research And Technology Hellas

Expertise:
Bioinformatics, Machine learning, Training

More about Fotis

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Bastian Greshake Tzovaras

Pronouns: he/him
@gedankenstuecke

Center For Research & Interdisciplinarity

Expertise:
Bioinformatics, Citizen science, Web development, Python, Personal data, Community management

More about Bastian

The GitHub avatar of

Hao Ye

Pronouns: he/him
@Hao_and_Y

University of Pennsylvania / Community for Rigor

Expertise:
Ecology, Health sciences, R, Git and github, Version control, Time series analysis, Research reproducibility, Community management, Ally skills training

More about Hao

The GitHub avatar of

Harpreet Singh


Hans Raj Mahila Maha Vidyalaya Jalandhar

Expertise:
Bioinformatics, Molecular Modeling, Machine learning, R Programming

More about Harpreet

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Iratxe Puebla

Pronouns: she/her
@IratxePuebla

Asapbio

Expertise:
Preprints, Publishing, Open access, Data publication

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Ivo Jimenez

Pronouns: he/him
@ivotron

Uc Santa Cruz

Expertise:
Computer Science, Open infrastructure for science, DevOps for science, Best software delivery practices applied in scientific contexts

More about Ivo

The GitHub avatar of

Jez Cope

Pronouns: he/him
@jezcope

The British Library

Expertise:
Research data management, Digital scholarship, Libraries, Open research, Open data, Open scholarship, Open science, Research software engineering practice, Neurodiversity, Glam

More about Jez

The GitHub avatar of

Joel Ostblom

Pronouns: he/him
@joelostblom

University Of British Columbia

Expertise:
Static and interactive data visualization, Introductory data science, Reproducible analysis workflows, Image analysis, Python, Git, Project organization, Stem cell biology, Bioengineering

More about Joel

The GitHub avatar of

Jo Havemann

@openscicomm

Access 2 Perspectives

Expertise:
Open Science, Open Access, Scientific Writing, Research Data Management, EvoDevo, Research in Africa

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The GitHub avatar of

Jonny Heath

Pronouns: He/him

Expertise:
Poetry, Philosophy of scientific representation

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Joyce Kao

Pronouns: She/Her
@joyceykao

University Hospital Rwth Aachen

Expertise:
Open innovation, Digitalization

More about Joyce

The GitHub avatar of

Lena Karvovskaya

Pronouns: She/her
@Langdata

Vu Amsterdam

Expertise:
Community management, Rdm, Open science

More about Lena

The GitHub avatar of

Kate Simpson

Pronouns: She/her
@Dr_KateSimpson

Imperial College London/ The Alan Turing Institute

Expertise:
Open community development, Basic open science principles, Basic github skills, Energy, carbon and enironmental data for buildings

More about Kate

The GitHub avatar of

Katrina Exter


Flanders Marine Institute (Vliz)

Expertise:
FAIR data, Data management, Open data, Marine data, Astrophysics

More about Katrina

The GitHub avatar of

Kaitlin Stack Whitney

Pronouns: she/her
@kstackwhitney

Rochester Institute Of Technology

Expertise:
Accessibility, Road ecology, Novel ecosystems, Insects, Zines, OER

More about Kaitlin

The GitHub avatar of

Laura Carter

Pronouns: she/her
@LauraC_rter

University Of Essex

Expertise:
Human rights; gender; sexuality; critical data studies

More about Laura

The GitHub avatar of

Laura Ación

Pronouns: she/ella
@_lacion_

MetaDocencia

Expertise:
Ethics in artificial intelligence, Health data science, Responsible use of data, Latin america, Open education, Community building

More about Laura

The GitHub avatar of

Louise Bezuidenhout

Pronouns: she/her
@loubezuidenhout

University Of Oxford And University Of Cape Town

Expertise:
Open Science, Open Data, FAIR, LMIC research/ers, Social studies of data

More about Louise

The GitHub avatar of

Malvika Sharan

Pronouns: she/her
@malvikasharan

The Alan Turing Institute

Role in OLS: Director of Partnerships and Strategy

Expertise:
Community building, Mentoring, Data Science best practices, Reproducibility, Inclusive and collaborative practices, Python, Version Control, Funding Proposals, Bioinformatics, Algorithm design

More about Malvika

The GitHub avatar of

Marta Lloret Llinares

Pronouns: She/her

Embl-Ebi

Expertise:
Course design, Online training, Course organisation, Community building, Competency frameworks, Molecular biology, Gene expression, RNA, Chromatin, Differentiation of mESC, Drosophila melanogaster

More about Marta

The GitHub avatar of

Martina Vilas

Pronouns: She/her
@martinagvilas

Max-Planck-Institute Ae

Expertise:
Open source, Open source documentation, Open infrastructure, Open science communities, Version control, Computational Modeling, Machine learning, Neuroimaging, Neuroscience

More about Martina

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Meag Doherty

Pronouns: she/her
@emdohh

Expertise:
Product strategy, Go to market, User research

More about Meag

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Margaret Wanjiku

Pronouns: she/her
@meg_wanjiku

International Centre Of Insect Physiology And Ecology

Expertise:
Community building, Bioinformatics
The GitHub avatar of

Michelle Mendonca

Pronouns: she/her
@mishrose2

EMBL-EBI

Expertise:
Science communication using social media, Creating digital content, Aligning digital strategy with research goals

More about Michelle

The GitHub avatar of

Wendi Bacon

Pronouns: She/her

Embl-Ebi

Expertise:
Bioinformatics, Single cell transcriptomes, Galaxy

More about Wendi

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Nicolás Palopoli

Pronouns: Él/He/Him
@npalopoli

Universidad Nacional De Quilmes & Conicet

Expertise:
Bioinformática, Ciencia abierta, Educación, Bioinformatics, Open science, Education

More about Nicolás

The GitHub avatar of

Piraveen Gopalasingam

Pronouns: he/him
@cascade21

Embl-Ebi (European Bioinformatics Institute)

Expertise:
Education, Training, Course design, Course delivery, Science communication

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Prash Suravajhala

Pronouns: He/Him
@prashbio

Bioclues.Org

Expertise:
Systems genomics, bioinformatics

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Philippe Rocca-Serra

Pronouns: he/him
@Phil_at_OeRC

University Of Oxford E-Research Centre, Department Of Engineering Science

Expertise:
Data Management, FAIR Data, Ontologies, Metabolomics, Functional Genomics

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Giuseppe Profiti

Pronouns: he/him/his
@GProfiti

Biodec S.R.L

Expertise:
Teaching, Devops, Software development, Bioinformatics, Wiki*, Carpentries, Communities, Databases, Reproducible science

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Rachael Ainsworth

Pronouns: she/her
@rachaelevelyn

Software Sustainability Institute

Expertise:
Astrophysics, Open Science/Research, Reproducibility, Community building, Organising events, Virtual events, GitHub

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Sam Van Stroud


Ucl

Expertise:
Data Science, GitHub, Software development, Python, Machine learning, Particle Physics

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Serah Rono

Pronouns: she, her, hers
@serahrono

The Carpentries

Expertise:
Web development, Open source, Community building, Community sustainability, Accessibility, Documentation, Ressource development, Communication, Outreach, Event planning, Public speaking

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Sarah Gibson

Pronouns: she/her
@drsarahlgibson

The Alan Turing Institute

Expertise:
Reproducibility, Cloud infrastructure, Open source, Community building, Continuous integration

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Stephen Klusza

Pronouns: he/him/his
@codebiologist

Atlanta Metropolitan State College, Adjunct Faculty and Laboratory Professional for Biology

Expertise:
Life sciences, Genetics, Synthetic biology, Accessibility

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Stefanie Butland

Pronouns: she/her
@stefaniebutland

Ropensci

Expertise:
Building inclusive sustainable communities, Communicating in the open, Virtual events, Github, r, Open software peer review

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Tainá Rocha

@Tai_Rocha_

Botanical Garden Of Rio De Janeiro

Expertise:
Patterns of biodiversity distribution in time and space, Impacts of climate change on biodiversity, Spatial analysis

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Julieta Arancio

Pronouns: She/her
@cassandreces

University Of Bath & Drexel University

Expertise:
Open science hardware, Sti policy, Open educational resources

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Toby Hodges

Pronouns: he/him
@tbyhdgs

The Carpentries

Expertise:
Designing and developing training material, Collaborating with git & github/gitlab, Publishing web content, Wordpress, Jekyll, Github/gitlab pages, Scientific community engagement, Teaching and organising workshops

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Sonika Tyagi

Pronouns: she/her
@tsonika

Monash University Melbourne

Expertise:
Genomics, Machine learning, Data Science, Computational Epigenomics, Transcriptomics

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Renato Alves

Pronouns: he/him
@renato_alvs

European Molecular Biology Laboratory (EMBL)

Expertise:
Full-stack developer, Computational Training, Reproducibility, Computational biology, Metagenomics, Meta-transcriptomics

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Yo Yehudi

Pronouns: they/them
@yoyehudi

Role in OLS: Executive Director, Business and Development Lead

Expertise:
Software development, Community building, Mentoring

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Yvan Le Bras

Pronouns: He
@Yvan2935

French Museum Of Natural History

Expertise:
Ecology, Data management, Data analysis

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Experts sorted by their expertise areas

A dedicated slack channel will facilitate open discussions among experts and other participants in OLS-3 to help them expand their network while discussing relevant topics (contact the team if you are not yet on this channel).

Facilitators

Facilitators work closely with the OLS organisers to manage and run cohort calls. They lead efforts in preparing cohort call notes, co-hosting cohort calls and ensuring the sharing of call recordings and resources through OLS channelss

We thank the 1 persons who facilitated in this round.

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Mayya Sundukova

Pronouns: she/her
@mayya_sundukova

Igdore

Role in OLS: Resident Fellow

Expertise:
Neuroscience, Microscopy, Imaging, Electrophysiology, Biophysics, Mental health, Journaling, Therapeutic writing facilitation, Life coaching, Career development

Organizers

The GitHub avatar of

Bérénice Batut

Pronouns: she/her
@bebatut

University of Freiburg

Role in OLS: Director of Learning and Technology

Expertise:
Galaxy, Galaxy training, Citizen science, Bioinformatics, High-throughput sequencing, Metagenomics, Wordpress, Jekyll, GitHub/GitLab Pages, Designing and developing training material, Collaborating with Git & GitHub/GitLab, Git, GitHub, GitLab, Publishing web content

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Malvika Sharan

Pronouns: she/her
@malvikasharan

The Alan Turing Institute

Role in OLS: Director of Partnerships and Strategy

Expertise:
Community building, Mentoring, Data Science best practices, Reproducibility, Inclusive and collaborative practices, Python, Version Control, Funding Proposals, Bioinformatics, Algorithm design

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Yo Yehudi

Pronouns: they/them
@yoyehudi

Role in OLS: Executive Director, Business and Development Lead

Expertise:
Software development, Community building, Mentoring

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Emmy Tsang

Pronouns: she/her
@emmy_ft

Role in OLS: Director of Finance and Operations

Expertise:
Community strategies, Open research

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Hosts for calls

Collaborators

OLS team have established the following collaborations to support organisation specific projects within the OLS-3 cohort:

OLS-3 for Turing

Under the collaboration name OLS-3 for Turing, Open Life Science has partnered with The Turing Way, a project within the Tools, Practices and Systems Research Program in The Alan Turing Institute.

This partnership will offer training and mentoring to interested members from Turing and The Turing Way communities to join the third cohort (OLS-3) individually or in teams. They will have an opportunity to develop Open Science aspects in the projects that they either already have been working on, or want to develop in the near future. Mentors will be preferably selected from The Alan Turing Institute but there will be a possibility to match projects with the right mentor from the broader cohort. The roles and benefits for the participants and the eligibility of proposed projects will be as described for our main program.

OLS-3 for EOSC-Life

Open Life Science has received the EOSC-Life Training grant (first round), to train and mentor EOSC-RI members under the collaboration name OLS-3 for EOSC-Life. In the simplest terms, EOSC-Life is 13 European life science Research Infrastructures making their data FAIR (Findable, Accessible, Interoperable and Reusable) so that researchers can combine resources from multiple RIs for new research funded through our Open Calls and receive support through the variety of additional services we offer, including alignment with relevant standards and policies (GDPR, etc.).

This program will provide a unique opportunity to individuals and teams in the RIs to integrate best practices for open and reproducible research in new or ongoing projects.

Resources

The resources available to the OLS-3 cohort members will facilitate their communication, training, mentoring and learning process during their participation in the program.

Calls

Cohort calls

The full cohort meetings take place every 2 weeks (unless mentioned otherwise) and last for 90 minutes.

During these calls:

  • Organisers/hosts will introduce new topic of the week
  • Speakers will present their work related to the topic of the week
  • Participants will be given group discussion exercises
  • An open Q&A will be run and notes will be co-developed
  • Exercises will be given for the week to be completed before the mentee-mentor meeting

The calls will be hosted online using the Zoom web-conferencing option. A link for the calls will be shared for each meeting separately.

Look up the shared notes for each call linked to the schedule. in this website. You will also be updated via email each week by the organisers with additional details to aid your participation.

If you can’t make it to a call:

The call will be recorded and available on the OLS YouTube channel after the call.

If you can not attend most calls during the program due to the time zone incompatibility or other personal obligation, please let the organisers know. If you are unable to communicate with your mentor regularly or do not engage in the program as planned, we may need to evaluate if you are able to finish the program.

Mentor-mentee calls

The Mentor-mentee calls take place every 2 weeks (unless mentioned otherwise) and last for 30 minutes.

During these calls:

  • Mentors help their mentees evaluate their understanding of the new topics
  • Mentees will complete their task assigned at the cohort calls using new skills learned that week
  • Mentors and mentee will review progress together where mentees provide constructive feedback
  • Mentors will connect mentees with other experts and get consulted on their project when needed

Coordinate with your mentor how you manage the notes and assignments for your 1:1 calls.

The online communication options can be agreed upon by the mentor-mentee pairs. A few options to explore are the following:

  • Zoom: 40 mins limit for each call
  • Google hangout: Free for members with google account
  • Skype: Free, download the app
  • Whereby.com: Free option, valid upto 4 participants
  • Jitsi: Free, open source web-based call is possible
  • Whatsapp or other phone-based calls: Only if both mentor and mentee are comfortable with exchanging numbers

If a mentor has to miss a mentee-mentor meeting, please discuss it with your mentee and reschedule your call. If you are unable to make it to any slot together, please find other ways (asynchronous documentation) to interact with your mentee.

If a mentor has to step back from the program for any reason, please communicate with the organisers to identify an alternative for their mentees.

Skill-up calls

In some weeks during which there is not cohort call, we will offer some optional skill-up calls.

The calls will be hosted online using the Zoom web-conferencing option. A link for the calls will be shared for each meeting separately.

Look up the shared notes for each call linked to the schedule. in this website. You will also be updated via email each week by the organisers with additional details to aid your participation.

Coworking calls

The coworking sessions take place in weeks during which there is not cohort call. These calls are optional but highly valuable for enhancing your understanding of the materials discussed in OLS-3 with the help of other participants.

During these calls,

  • Participants can work together on the assignments
  • Participants connect and talk about their projects

The calls will be hosted online using the Zoom web-conferencing option. A link for the calls will be shared for each meeting separately.

Mentor calls

4 mentor calls will take place during the program.

The calls will be hosted online using the Zoom web-conferencing option. A link for the calls will be shared for each meeting separately.

Speaker Guide

We have a short guide for invited speakers.

Communication channels

Communication within the cohort members

OLS-3 Slack Channel

A dedicated Slack channel has been setup to facilitate real-time as well as asynchronous communication among the all members of the OLS-3 cohort. A personal invitation link will be shared with the participants via an email.

OLS-3 private Google group

Organizers inform participants of the week schedule by email. An archive of all emails can be found on the private OLS-3 Google group.

An invitation is sent to all participants (mentees, mentors, etc) at the beginning of the program. If it is not the case, please contact the team

Communication with members not in the cohort

Twitter

General updates from the program such as new posts, collaborations and relevant retweets will be shared via our official Twitter channel.

Gitter

We have a public Gitter channel that can be used by members of the public contact the OLS team and community.

OLS Google group

Updates regarding new calls for applications, announcements, and final project presentations are posted on the OLS public Google group

Community Participation Guidelines

This project, as part of the Open Life Science community, is committed to providing a welcoming, friendly, and harassment-free environment for everyone to learn and grow by contributing. As a result, we require participants to follow our code of conduct.

This code of conduct outlines our expectations for participants within the community, as well as steps to reporting unacceptable behavior. We are committed to providing a welcoming and inspiring community for all and expect our code of conduct to be honored. Anyone who violates this code of conduct may be banned from the community.

Our open source community strives to:

  • Be friendly and patient.

  • Be welcoming: We strive to be a community that welcomes and supports people of all backgrounds and identities. This includes, but is not limited to members of any race, ethnicity, culture, national origin, colour, immigration status, social and economic class, educational level, sex, sexual orientation, gender identity and expression, age, size, family status, political belief, religion, and mental and physical ability.

  • Be considerate: Your work will be used by other people, and you in turn will depend on the work of others. Any decision you take will affect users and colleagues, and you should take those consequences into account when making decisions. Remember that we’re a world-wide community, so you might not be communicating in someone else’s primary language.

  • Be respectful: Not all of us will agree all the time, but disagreement is no excuse for poor behavior and poor manners. We might all experience some frustration now and then, but we cannot allow that frustration to turn into a personal attack. It’s important to remember that a community where people feel uncomfortable or threatened is not a productive one.

  • Be careful in the words that we choose: We are a community of professionals, and we conduct ourselves professionally. Be kind to others. Do not insult or put down other participants. Harassment and other exclusionary behavior aren’t acceptable. This includes, but is not limited to: Violent threats or language directed against another person, Discriminatory jokes and language, Posting sexually explicit or violent material, Posting (or threatening to post) other people’s personally identifying information (“doxing”), Personal insults, especially those using racist or sexist terms, Unwelcome sexual attention, Advocating for, or encouraging, any of the above behavior, Repeated harassment of others. In general, if someone asks you to stop, then stop.

  • Try to understand why we disagree: Disagreements, both social and technical, happen all the time. It is important that we resolve disagreements and differing views constructively. Remember that we’re different. Diversity contributes to the strength of our community, which is composed of people from a wide range of backgrounds. Different people have different perspectives on issues. Being unable to understand why someone holds a viewpoint doesn’t mean that they’re wrong. Don’t forget that it is human to err and blaming each other doesn’t get us anywhere. Instead, focus on helping to resolve issues and learning from mistakes.

Diversity Statement

We encourage everyone to participate and are committed to building a community for all. Although we will fail at times, we seek to treat everyone both as fairly and equally as possible. Whenever a participant has made a mistake, we expect them to take responsibility for it. If someone has been harmed or offended, it is our responsibility to listen carefully and respectfully, and do our best to right the wrong.

Although this list cannot be exhaustive, we explicitly honor diversity in age, gender, gender identity or expression, culture, ethnicity, language, national origin, political beliefs, profession, race, religion, sexual orientation, socioeconomic status, and technical ability. We will not tolerate discrimination based on any of the protected characteristics above, including participants with disabilities.

Reporting Issues

If you experience or witness unacceptable behavior, or have any other concerns, please report it by contacting the organisers - Bérénice, Malvika and Yo. (team@we-are-ols.org).

To report an issue involving one of the members, please email one of the members individually (berenice@we-are-ols.org, malvika@we-are-ols.org, yo@we-are-ols.org).

All reports will be handled with discretion. In your report please include:

  • Your contact information.

  • Names (real, nicknames, or pseudonyms) of any individuals involved. If there are additional witnesses, please include them as well. Your account of what occurred, and if you believe the incident is ongoing. If there is a publicly available record (e.g. a mailing list archive or a public IRC logger), please include a link.

  • Any additional information that may be helpful.

After filing a report, a representative will contact you personally, review the incident, follow up with any additional questions, and make a decision as to how to respond. If the person who is harassing you is part of the response team, they will recuse themselves from handling your incident. If the complaint originates from a member of the response team, it will be handled by a different member of the response team. We will respect confidentiality requests for the purpose of protecting victims of abuse.

Attribution & Acknowledgements

This code of conduct is based on the Open Code of Conduct from the TODOGroup.